Subio Platform v1.16.4372 is now available.
We're pursuing better usability of Subio Platform, and implemented lots of small improvements. Thought each change may be small, you'll feel much comfortable in total. It also involves many bug fixes. Please see the overview of new Subio Platform on movie.
NEW FUNCTIONS of Basic Plug-in v1.16
- A new normalize block “Fill Missing Values” is added.
- A new normalize block “LOWESS (Ch1/Ch2)” for 2 color data is added.
- “Weighting by length” option is available as an option settings of creating bins.
NEW FUNCTIONS of Genomic Analysis Plug-in v1.16
- “Weighting by length” option is available in “Summarize” tool.
IMPROVEMENTS of Subio Platform v1.16
- Subio Platform code is digitally signed.
- You can copy measurement lists or pathways from other series of a same platform.
- You can select columns to export/copy from the annotation/region/biological table.
- The datasheet table can display gene symbols or names.
- The strand option is added to the import samples wizard.
- Importing BAM/BED/GFF files consumes far less memory.
- Loading a series which has flag columns becomes faster.
- Look Up wizard automatically trims values to avoid unintentional mismatching.
- Organism data for Arabidopsis and Rice are included in the installers.
IMPROVEMENTS of Basic Plug-in v1.16
- Selecting many control samples in “Ratio to Control Samples” block’s option becomes easy.
IMPROVEMENTS of Genomic Analysis Plug-in v1.16
- You don’t need to uncompress sequence files. Download and store them as gz files.
FIXED PROBLEMS of Subio Platform v1.16
- Color blocks under the line graph are sometimes not updated on switching DataSets.
- Cancelling “import samples” wrongly generates empty samples.
- Assigning lots of parameter values consumes large memory and degrades performance.
- The correlation value in scatter plots doesn’t reflect scale mode.
- Working memory is not released after switching organism.
- The scale of the genome view sometimes doesn’t reflect user’s settings.
- Genome view may not display all measurements in certain area.
- Ratio (Ch1/Ch2) always takes Ch1RawSingals instead of processed values.
- Exporting Regions may not contain all existing columns.
- Exporting Series fails if the path of install directory contains special characters.
- On “Edit Parameter” panel, removed series are displayed in import from series option.
- Multiple windows of “Import Samples Wizard” can be open.
- Clearing minor tick option doesn’t work in the scatter plot of samples view.
- Subio Platform unexpected shuts down when a not-existing measurement is selected.
- Subio Platform unexpected shuts down by clicking repeat button without selecting cells.
- Subio Platform unexpected shuts down by clicking “Import Samples,” if there is no platform.
FIXED PROBLEMS of Basic Plug-in v1.16
- Ratio to Ch1/Ch2 always takes Ch1RawSignal instead of processed values by former blocks.
FIXED PROBLEMS of Genomic Analysis Plug-in v1.16
- Region input fields don’t override if the new region has a same name.
- Subio Platform unexpected shuts down by dragging on the scatter plot of regions
- Vertically expanding the panel of “Get Sequence” doesn’t expand result area.