Subio Platform v1.13 is now available.
The main features of v1.13 are improvements of Genomic Analysis Plug-in for transcription regulatory network and epigenomics studies. And it includes many important bug fixes.
IMPROVEMENTS of Genomic Analysis Plug-in v1.13
- “Summarize” calculates representing values based on relative locations like upstream regions of gene bodies.
- “Measurement to Region” accepts a DataSet, not only a Sample Group, as input.
IMPROVEMENTS of Subio Platform v1.13
- - “Import Archive” is added under the Platform menu to accept both SSA and SOA files.
- - All values attached to Measurement Lists are all kept in the one created with Venn Diagram.
FIXED PROBLEMS of Subio Platform v1.13
- Importing a Measurement List takes only the first hit, not all hits.
- “Save a Text File” button creates a empty file if “Separately” option is selected in the preference.
- The title rows in Edit Parameter window can be collapse
- Memory error occurs when you import a kind of BAM/SAM files.
- Importing SSA created with 1.9 or older versions of Subio Platform fails.
- Importing SSA fails if the SSA was created when some pathways are in the trash can.
- Negative values are incorrectly drawn in log scale in Line Graph.
- Column titles of Sample Information are sometimes not displayed just after importing Samples.
- Some options of Import Samples Wizard don’t work when you define a new custom format.
- The Delete Columns button in Edit XXX windows sometimes don’t work correctly.
- Attached files are remained even after unloading a Series.
- Sometimes the number of Samples is shown as zero even if it actually has Samples.
- Subio Platform doesn’t respond when there are too many sample parameters.
- Subio Platform unexpectedly shuts down when you search annotation with specific sequences of characters.
- Some plug-in tools are not refreshed when a Series is unloaded, and they may cause a crush.
- Subio Platform unexpectedly shuts down as controlling editing tables with arrow keys + Ctrl key.
- You can’t select files from the Select Files button of Import Samples on Mac.
- Exporting pathways fails when some specific characters are included in names.
- You can’t create a Series if some Samples have no Ch1 Raw Signal values.
- The number of deleting Samples during the deleting process is incorrect.
- Objects in the trash can of Children Platforms become invisible after merging.
- The label of Line Graph is not correct after you unload a Series with showing Ch1 Raw Signals.
FIXED PROBLEMS of Basic Plug-in v1.13
- - The option panel of “Ratio to Control Samples” normalize block is sometimes empty
FIXED PROBLEMS of Annotation Analysis Plug-in v1.13
- The result of Keyword Enrichment tool is incorrect if there are double quotes in the annotation.
- P-values of Chi-square test of Keyword Enrichment tool are incorrect.
FIXED PROBLEMS of Genomic Analysis Plug-in v1.13
- Sometimes Subio Platform unexpectedly shuts down as editing the result table of Get Sequence.
- You can’t input “-“ (minus) in the fringe field when no number is already input.
CHANGES of Subio Platform v1.13
- You can now easily grab the dragging tabs between panels in Analysis Browser.
- Recovering samples which you can’t recover from the trash can is automatically cancelled.
- Heights of bar graphs of Region tracks is as large as Sample Group tracks.
- You can select entries which values are zero in a bar graph of Region track by dragging.
- The ordered of Plug-ins is re-designed.
CHANGES of Basic Plug-in v1.13
- “Save Profiles” of “PCA” tool omits saving latter than 10th
CHANGES of Genomic Analysis Plug-in v1.13
- “Create Intervals” doesn’t accept a Measurement List as input.
- “Measurement to Region” omits creating entries with data lacks.
- The panel and options of “Genomic Location Filter” is re-designed.
- Selecting the current Biological Table in the reference or query track by a toggle button.